Scaffold Ga0207896_1005942

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1005942
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2221
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012166	Metagenome	283	Y
F015027	Metagenome / Metatranscriptome	258	Y
F030601	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100594210	F012166	GAG	MADLANSGVFLGRKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWVDMYNKDFCDVCSFAGYDAGYIYRKAKNKVNKWLPNGS
Ga0207896_10059423	F030601	GGA	VIELIKRILRLKTIHRDRGTNSANGDSLDLSDDGQPSDDSRRSKGESTVRDGVSQNEIKQPIFVNEDPEYCKHLAKFFKGEK
Ga0207896_10059427	F015027	AGGAG	MTDKLYEATKKEVMSEHEEYINADVPKEIWIERNKYLHQHIDMLTEELIKVRLDNKKLSEQIEDQIKQFRNSGGL