Scaffold Ga0207896_1003057

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1003057
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3155
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → unclassified Cellvibrionales → Cellvibrionales bacterium TMED49 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024416	Metagenome / Metatranscriptome	206	N
F052880	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10030573	F024416	AGGAGG	MKIEVLMYNEEGQVVGKAIETACNSLIVNGVHVISNGGVNAEMRDLLGATTTQDIGMTLVPPLELN
Ga0207896_10030575	F052880	AGGAG	MEKVEYCYVAKCLGMKCPRVWAQTREECEAAMQQWTAKQVRFKPLGLYKYPLIHKGENKYEIDWGYEDDNGTYNDNGQDVL