Scaffold Ga0207896_1003049

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1003049
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3160
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10030491	F004606	N/A	MKTHRIFNKGQTVYCLLASHTNPNILLPVKGTILDSKWDPVNPLYQIRIIKLYDNMKFLKQHFFDMNFRHMFENRARKMILKAEDFKTTRALESRLNDKDRERFYVVIESVMCTKTKVGLSELFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSVK
Ga0207896_10030492	F008190	AGGA	MEEHIEFNFIYSDDALRVKTFLGNVPRSIECINYMDIFNKLTKNDYYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETIGGIQDYVGSLSNKTITYKIYHSPDIIVNGAAELFDDIIEFE
Ga0207896_10030493	F018962	N/A	MVKIVLESARNGVIKKVIDDNYGGGKEHFTSTDVYESNEEHKLNKNTYIKRFFFDLCDDLGLELGSKFDKDVLDINTGWGSHYEPTVKDIETKIKRLKSELKELEEWKNI