Scaffold Ga0207896_1001073

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1001073
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5407
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F016061	Metagenome	250	Y
F060432	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100107313	F016061	AGGAG	MFMKVKLTNTLNAIAGRKPTIDRTNIKTYNKRGKYYVGASASGKFLQVNDGKHIRYYGNPFWNLYRVVSKNGSDFVIHEARR
Ga0207896_10010732	F060432	AGGA	MSKKKTVIPYTITHEERLALLEAHNNLRTALQTVGECQDLWMSDVRNLEKLECDLHRIFKFVPKQDAQGRSMHYADWILDEDDTNE
Ga0207896_10010734	F002430	AGGAG	MMITLNLPPKQVNAMLVAMDAEIEMQLGGRPVDWESFPEVAALLIAYYNTRCKFEENQDGEV