Scaffold Ga0207896_1000275

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207896_1000275

Scaffold Ga0207896_1000275

Overview

Basic Information
Taxon OID	3300025071 Open in IMG/M
Scaffold ID	Ga0207896_1000275 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11273
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (86.36%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064099	Metagenome / Metatranscriptome	129	N
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100027517	F064099	N/A	MTNVYRLIIIILLVYIIWVDHRYVQVGWCESEIDVLRNTIAEIHTILKQ
Ga0207896_100027519	F098062	AGGA	MSTQKETYGQTRDSVIQDFRKVKPLYAGKSNLYIMGILSDAQMMIDVKQYKTANQFINKAKLLLSTKCK

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