Scaffold Ga0207896_1000136

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1000136
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16112
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F016393	Metagenome	247	N
F027052	Metagenome / Metatranscriptome	196	N
F030097	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100013612	F009110	AGAAG	MITSAVLYMESLKDRVPPADEEVITVKQKRPGTPHLKTLGLDPHKMVKAVDKLKAKGLEVNDACEQVGMTRSQYYKTKKGVTNRK
Ga0207896_100013613	F030097	N/A	MKALDTAGTQSKISSCMGFMASGAARDAYRRLLTASTVGQSKGEQRKSVFSRTTKEGVKK
Ga0207896_100013615	F006684	N/A	MYKILISYIIASALALGLLNHAINKAQDHIETLAEVLVHHSDTLEDHRGVLLQMIDDRALPYM
Ga0207896_10001362	F016393	GAG	MARGQINSVLGMTEGKFRTMIKSALRPCWRNSSRKTFIQSVRQRGINPATGRERFVVVCVDCGKEMGMSEKERRTKIDGTLEKRAKSVYEIDHVDGITPFTDVQTLETLTPHFRDMIYGKQEVVCVACHKVRTANQRKKKSS
Ga0207896_10001363	F027052	N/A	MTTDLDEARQYADTMLEALDVMGRAMYFCLNHPNASEFKAHRKLLIGAHERMGKDTTHFLSQIDEPEPPYEPTEEELSQHG