Scaffold Ga0207896

Basic Information
Taxon OID	3300025071 Open in IMG/M
Scaffold ID	Ga0207896_1000130 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025071 Open in IMG/M

Scaffold ID

Ga0207896_1000130 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16572
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16572

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064880	Metagenome	128	N
F085895	Metagenome / Metatranscriptome	111	N
F092352	Metagenome / Metatranscriptome	107	N
F094097	Metagenome / Metatranscriptome	106	N
F095740	Metagenome	105	N
F103549	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100013011	F094097	N/A	MTKLYKQGKTDIDRLSNTSLTTIIREIPEAKAVKTAVSAAMYSVCNLYHDVDVEALSGMMDGFYREFQYEPLSVFIDVINDFKTGKVKVFGRITPNQIRESIMDKQLKIAIERENAHLDRKGDVGTRSTLTLREALAKVTTQK
Ga0207896_100013013	F085895	N/A	MNVDEALKLLEAKVEEDIHELTPKDRLLFWANLLEFKKAKIQRIPFLVPENDAKIIIEYEDYKTTAHASIPKPVDKPEEN
Ga0207896_100013015	F064880	AGGGGG	MKRFKIHYDDDIIGGQIPDSWEELTVKQWAALRPNVSDLELLSVLSNIDLGYLENTEADLSPAIEHVYQSIKDMPEDLNHLARKPLTILGHQIKFPKDINFARYGQKAMVKNAIQGAEDMREIVSDVIAIYAQPSIDGKFDSAKLEPIKKAVDSLPIIMAWPWVVFFLSKLNALKMTYLADWRQFQ
Ga0207896_100013018	F092352	N/A	MNIIATTLKSIIEGQGLTYLRAANPNDLNELVGSYDLSNGVGVYANLPTVTNITYGQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMIDKLNASNIIALSSFIDGYELEAIESINITSEVLSGWKLSFVLPIFRDTFECD
Ga0207896_10001302	F095740	N/A	MEEWLTEHWATLLAALGLGGGGSVVGHKMVDKIQNKKIEKLEIKVSEIDSNIKLNDGVDKQFRASVETRLSSIETSLSTLTNHLLNKKK
Ga0207896_10001305	F103549	GGA	MSCAGIFSGGTVSCSDPLAVGIEQRLFLANLNDIEVGGIAFDTTDNNLITGITMKSGKTFFEFEGLKQSISFQEEVQQKPFSTGYKLTVDFSVFDVSASQRRNLEAMVFQPQIAILFGPNDSSLSNGFCNVLGVDVGLDVITSIRIPADNETGGAYRVQLATPDAGGIETGYSKPMLVTDYAATLAAVVALKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207896_1000130

Overview

Ecosystem & Geography

Associated Families

Sequences