Scaffold Ga0207896_1000014

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1000014
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67310
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (68.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004282	Metagenome / Metatranscriptome	445	Y
F005195	Metagenome	409	Y
F018642	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10000141	F004282	N/A	WNWIKKLFRPWNLSKVSPDIKSVEPRISTVGLTKGDIKKLRGQGKKLDIDN
Ga0207896_100001447	F018642	GGA	MASVKEIQDQINNNTFDPSKLNARQRKAIDEAIRRGLITGPSMNELQTERAGAAKDVATMDAAVKNPIGVQLQQQGSSLDGRSEAVLAGDLIGSITPYVAMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFSDKLTARLPGRFKLLGGLTKLLAKVADPTIGRVIASPLGKAEIYSVLGGTAGAGAGSITYDMLNETVGVAAMDAIASDMENMSPKEVDTDMMANAADSMFTALAWNAGAAALTPVITKGLGKVGRLMIGAKSKDAKELVNIARDKGLPLPMVMTAQEGTGLLGGFAAKYFKVLGIMPFINGIGKEALQGAEQAAGRNYLNNDVLKYGPLVKTGMLSATVWKQADQAFIQNSNLINASYKAFDTLADTIGNPKVIPTGHVKFMAKNYVDELSMKYPGLRGYAQDALGDIDMKEIAKLQGTGDPLALFFRYMNGIDDFVTPKQYKGMMETLNRAIGDTSYDNIRPTLWSIREALENDLNSFGGNITKETFLKDDAVKAAYETLKKTNPAAAEADMALKIKASEGLRDKLYGANDTFSTLMNFYQRANATKVFKEYSTTAFTNKALAGIGSMEKKKAQRFFNDLANDVFTRGDSTAIKQFRQLLGADKITSKKTGKAIGVTKGGGEALYNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNDSTVRAGINGTVDVMESMVQKGDVVDFSIDKVKSGTNIFDATKIKFSPKDTSMFNINKFMRELGIGDATDDVAKEKMISILGGRAQSKEFEKFLTYMKAVSDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPIAMRAFNDALNPDEQIKLLMGQKVGNGVPGVLGIGRRYFKGRDIQTAANVLKSPGVVGRLGLTQKREAFARLVNYLNEGDVDIPRVDPKTVTPEEITERMGQLEAKVPAPNYNEDTIPKNNYEVMFAQDFSGSSGNLQTDTNAVEMLSTATQNEAMVDAEEAPIEAEEKMIMADLQLEDPIAQAPTAPVLPATGQVNSQNFQALFPNDPTGAAIAQRGNKRG
Ga0207896_100001482	F005195	AGGAGG	MSLKALLRAGKELLKAKKPSATPTTGQQQRQITYEPKPSQAQGQELAVRELKNPPVVLKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTTTRKVNFKIFGKPAQKTVREQKRFKYDQGPFAGKEVNVSKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMIKLNPINRLKPIELGVNKGAQEAFEVSAKNARNTLRDLQVKYKDNLSVKEELDQLQYFLKADSGVPSRGSLKDLNIALKNLTKSGMVAADEKKALNKVIGDVNNKVGPMQATKTKYGTESNYTLQGGKDYRETIFTLSEDIPTNAKLRNRGGHFVDEIGDVNNIYHIRFDTRFTPEGKKVFMINEIQSDVNQSIAKKMTKVQQLSGEARLNPFNAEIELNLLVGQRGKMLKDLDDALARNEFGRVNSISASMKDINTKLKRLTSQRNSYNDTNKDYFPMVEADSYGDHAVKYLMQKAARENVDYIAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVLPDVMGKNARFYGSSAGPTKISLSDPTKPYKNVSSDTFTYPKDHPLKGKQIKSSYHSNSGMNPEKGTKNIPAGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIGYN
Ga0207896_100001488	F004282	AGGA	MWNWIKKLFRPWNLSKVSPDIKSVEPRISTVGLTKGDIKKLRGQGKKLDIDN