Scaffold Ga0208667_1017985

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1017985
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1422
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F074747	Metagenome	119	N
F084722	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10179852	F074747	N/A	MNIKYIVPVGSKITRKFYCPVLKKQVALTTDFTEDKIVFNANELKTVDSGYNFSYFRFTVSATNYEGQPIIKKFDVDYSVSAEYIEIDKQMEVVC
Ga0208667_10179854	F084722	GGAGG	MTKIYMAVKYPKNWTGKKDIKVITLEEHLKSYNSICDNIGDGLQLFLNEDDAKKHLIKVN
Ga0208667_10179855	F002485	N/A	SKSLYFKNIGNNTVYYSYNTTVAIKTPIDTYVSENVWSVTTAKHLNRIEELTGSNREYRMRYKDFIDFLEKNNIDRKY