Scaffold Ga0208667_1014343

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1014343
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F066238	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10143432	F005495	N/A	MLKWNGGSNTPNLNMKKYKILTDTMAGGSKVHAGDIVELTESEGHSLCGYGKAEVHVGKPKAEKQDRSVGLETSKVKAPKTRAKK
Ga0208667_10143433	F066238	GAG	MPMEFDRDFNGYLDATYGHGIKITYTPTGGSSSSIEVILNQEYVDIDSGGLPVQGYQPVAQAKTTDIPSIAFGDTIAAPAIKNLDGTQIKAATNYKVINFEHDNLGMTSLLLEVQ
Ga0208667_10143435	F004956	AGGAG	MKMISPNGKTSIEVPQSNVETMLGMGWKEEAVQSEDKIKSSSKKKPKGEVKENVNI