Scaffold Ga0208667_1010723

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1010723
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2096
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031256	Metagenome / Metatranscriptome	183	N
F039823	Metagenome / Metatranscriptome	163	N
F040053	Metagenome / Metatranscriptome	162	N
F041489	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10107234	F039823	AGGAG	MSNKTINVSYWKQSTGRTGQCLTERGQKIFDTLQPIYEEVVGLPLSKEKMYDMSLTLSRATKDEEGFYIQNTASTAFMILVQDLTSMCRHIRKGKEYKSISFGVFKVSNLKDLAKSKLGRKRKVA
Ga0208667_10107236	F031256	AGGAG	MTIPYWQIGLKIGSESGQVNVHSDALPDASWEYAIEHAMDTARAVHPTERIEFLYVKEYN
Ga0208667_10107237	F040053	AGGAG	MKAYFINAKDELIVEVDCKDYHHKLELLNCRMIELYPRHINNNDIWVDEEGLLKQSNYFASIDMDLKESVASYVISGNAIVLSCDDEGNSTDVKDLTIEELKSRVTFHGKRFIESNGHSFTTREWEDA
Ga0208667_10107238	F041489	AGGAG	MSILVADIKFYVVDDDGNEKLNKEGTHIQLYQLKRDRRFKALEYLTEDMDMDLLEEINE