Scaffold Ga0208667_1009478

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1009478
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2295
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F028792	Metagenome / Metatranscriptome	190	N
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10094782	F029289	GGAG	MRTAYECRHTLAYASPSAITPRYPNAASDPRLTNTADKYFTLRRQIRDKEWSREPVTNAERDKLATLKQALNDDKHYTPNF
Ga0208667_10094784	F002733	AGGAG	MMTKTDKIWLQLTHTEANALMVMLDSEIESCHNYGGGIDLDNWENIDLEAYKLLAFHKFKTWYMENCDG
Ga0208667_10094786	F029934	GGAG	MATITRTCLACDGGGIAEYDKPVTDFANGGWITSTYGKCDVCDGEGDLHVLSEFTSLDILAFLNESAKILEDADIVDSTLDDIYGHVKDAKDKVREYIKFHGYDGDDR
Ga0208667_10094787	F028792	N/A	YKVRVRVTTEREVIVEADGFDEAEIKAMVEAVTLVDGYDAEVLWAVEHGSLSDWEKNDGNDN