Scaffold Ga0208667_1008663

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1008663
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2446
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F004856	Metagenome / Metatranscriptome	421	Y
F011192	Metagenome / Metatranscriptome	294	Y
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10086633	F004856	AGGAG	MSDWLDGTKPKKIEARYSAYLSWDLDDEGIDWDDIKDYEVFRADLHITLKDGTEKVIENWNDVEIDYKHNLEEVLILDNDWREVEGLN
Ga0208667_10086634	F011192	GGAGG	MTAKEMTDNDFINFQDDFYNLLEKYGVSSIDIEHPQFATICNLRDSVVEFIEQETWEEDN
Ga0208667_10086637	F003051	GGA	MKVKQLKTKVSIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRYELVELLDAEWNPDTYRYVKRGSK
Ga0208667_10086639	F094102	AGAAG	MEQEQKTTNMVDNMIDGFLSPMNKEEFRMWEDYIIRYNHSNPTDQIAYEVTWNEDNYKVKLLNLKVDNEG