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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1008191 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2549 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004603 | Metagenome | 431 | Y |
| F009521 | Metagenome / Metatranscriptome | 316 | Y |
| F015990 | Metagenome | 250 | N |
| F027830 | Metagenome / Metatranscriptome | 193 | N |
| F059873 | Metagenome | 133 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_100819110 | F009521 | AGGTGG | MKYQIIINNGTLKGWTAFKGSCLATMQDKYKRLEQQGHKLKLIRGK |
| Ga0208667_10081912 | F015990 | AGGAG | LTGKGSGRRKEDINKIRNNWDSVFGKKKKKQITEVTIEFTMQGNPRINDMNNQVEKMLKEDKIVYSTVTKYI |
| Ga0208667_10081914 | F027830 | GGAG | MNNMTFNIAFGKYSAHYRDQGFGGELPYISETHSRATGEGGYLLRDENDRHIAYITKDGKVQA |
| Ga0208667_10081915 | F059873 | AGGAG | MSIEYFGVKIKATTYGDFPDNVKEITHADIQFSVPCDVSKEKKFEKAKDNLLQAVIDVYALEDQQQVDVTIEYEYFGVNNQ |
| Ga0208667_10081916 | F004603 | N/A | MIFSININGSIVDWCYNLDCQDKQYHKTWIPKSRDIQIITKDLNGLTISEVKKIILEDIQPDINMVKEHNNKLARARRMGQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |