Scaffold Ga0208667_1007380

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1007380
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2749
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011192	Metagenome / Metatranscriptome	294	Y
F091971	Metagenome	107	N
F096206	Metagenome	105	N
F103914	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10073802	F011192	AGGAGG	MTAKEMQDQDFISFQDDFYNLLEKYGVSSIDIEHPQFRSICDLRNKVAEFIEQENFEEVL
Ga0208667_10073803	F103914	AGGAGG	MYTADRTDLLDALASSMRDCIETEISSTEFTLEEYFRCSLIDRGVASTRSEMIARRMAEGNLEGLAYHVASCDPHYLKKLIQAEPRLIHMLLQNNKMSDLDVKIVEEEVLR
Ga0208667_10073804	F096206	GGGGG	MSFTVDFGNIRETDEEGRKWLNGVQYWVGSYMMAIGMDEITEKNYLEVYARLRMLDTSILALGNDGDGEPWMNIDMLQRLIGAKFWGRHINVESRAKFSSRMLRGTINATEKKVAKESKEVA
Ga0208667_10073805	F091971	AGGCGG	LRACKLEKVMDKLNQLFEPSRQVGSDKKYRHIVKDQIIQGDELEVNGVRRSFWSNPNGTHSCHMWNVSQGKVIDQLTVDSFDGEDLQAFQLRTQDILWGV