Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1005428 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1005428 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3436
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (89.47%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

3436

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (89.47%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010571	Metagenome	302	Y
F024920	Metagenome	204	Y
F055274	Metagenome / Metatranscriptome	139	Y
F059441	Metagenome	134	N
F061778	Metagenome	131	N
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100542811	F024920	AGGAGG	MIEELLDKYHEDDFDKLLINIINHMIEAKEIRKIDREKYDE
Ga0208667_100542812	F061778	N/A	MNKYIIAVHYEEGFTVEVTAPNSDEASKVAKEFVSANCGVSESFDNVGEDEGKFIKPYHRDYWIIGER
Ga0208667_100542813	F010318	AGGAG	MNVDSDKPRYIECIYEGNITFDLEELDIDWDDVKDYWVKHGILHVDFKNGDTKTYWDMTIGEPDYKWAVRESILTEDWDLVEGLN
Ga0208667_100542816	F106085	AGG	MTNNLLESLRKKLYFSLDKVRNKFTIFKKLKRNNKIIINKDNKNNIPKHLRELNKETLQTLQELYKERM
Ga0208667_100542818	F003051	N/A	MKTKILKSKVSIDMSVSEYDTLFKYINKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWDTNSYRYIKRGSK
Ga0208667_10054284	F055274	AGGAG	MSNTYNDITNALCNAIDIKKTIESNGLADVKRVHGGTDNEDNLKDLIDDVIYFLKQLEVQ
Ga0208667_10054285	F010571	GGAGG	MSNTIQENYIQKLYEELYEKYYEELGKTTDDVGYIEKEAEKLAEIDLDNFEMEG
Ga0208667_10054286	F059441	GGAGG	MKTWSSTITYSVFDMGRECETEEDYIEWVKETFREDHNIELRDDEITNIQREQLYYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1005428

Overview

Ecosystem & Geography

Associated Families

Sequences