Scaffold Ga0208667_1005149

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1005149
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3577
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016899	Metagenome / Metatranscriptome	244	N
F017221	Metagenome / Metatranscriptome	242	Y
F099109	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100514911	F017221	GGAG	MDYIKNDYELQQLALSIALEAIEEVKKHGGDHYELIDQAAASSEHAVYTYKAIMLCANCCTADAEEILDDNGYERFDSFAHHASVLAEVTIQNAALQEFYELGGEAAA
Ga0208667_10051493	F016899	AGGAGG	MIFKQYMLEGTMDPEVQAVFKAAADISNGVFTLTEAAQFYKVHPAVIVQFIAESAEYDMIFHKGDKEQ
Ga0208667_10051494	F099109	GAGG	MGRKIRYFRNGTTDSRLVAGKLYTMNELAKLVNFSPSTLRNRVGTGDTVTDEHFISRKRVHVIWPVFETEAEAKSAEWLRRAL