Scaffold Ga0208667_1004590

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1004590
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3887
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F012662	Metagenome / Metatranscriptome	278	N
F012863	Metagenome	276	Y
F032086	Metagenome	181	Y
F052535	Metagenome	142	N
F057323	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10045901	F012863	N/A	YCQRLAEDINDSYSDDIEVTDRIHEIADGCQYVIYYAKAWDLVNMMREYNHELFMQAVDEVRDNGFEFDNEDAMRDLNTHMTWIAFFLIRNGIYSAYQHIESEAVA
Ga0208667_100459010	F012662	N/A	MKEILLQPADMIEELMYHILWNEFDGELDPDHKYFPLYLSLQQLLEDETKRLEE
Ga0208667_10045904	F052535	N/A	MKRPYEVLALDDSNTPVRIATIIENSPAKAKATGQKLAKSLRQRFHTVNLIKE
Ga0208667_10045905	F057323	N/A	MMKILVLTIRAHGEEDDIYVFNDREVNVLPTIKEWVKENDIKLTLPDHVTDTHSFMDWFYDAENSLEECYDFFVSLQYKELLSE
Ga0208667_10045906	F008547	AGGA	MSVTIYLTDHHGKQIAFFYRIDNERYSLTPQLLWCCRNYPEYQGTAESKEHFIEQAKGVIKELGKRSVPVCKDCGLTNPKMEAQDTCPECLINE
Ga0208667_10045908	F032086	N/A	MTNNEPTFLDMNDLCDDSLEALIQHYLSLKHRMPDNLTVRERLLELEREQFNREREQETNTTNE