Scaffold Ga0208667_1004540

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1004540
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3920
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024922	Metagenome	204	Y
F039093	Metagenome	164	N
F070652	Metagenome / Metatranscriptome	123	N
F081885	Metagenome	114	N
F087768	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100454010	F039093	GAG	MIKTLLILGLLSGFGLMFLGVIALFSNYAELIMPSYIPLIIIGSGVVIFFRTLHHINNNI
Ga0208667_10045404	F081885	AGG	MKPIDKVNVDKDLMFFKTDKGKKVYEIKTEIQRYLTFQVVADNSDEAFEKYLDNAKVDVVDDSFSTEIVLSGQDEYDQYQDTVCIGTIKVDDDDEAYVSCEIKKDKPLILTKEIEVK
Ga0208667_10045406	F070652	N/A	MTELKQDHFELIDSNKQRAFEERKQMRVELTKYIDKCNTYELSKLYDEYKRLKRK
Ga0208667_10045407	F024922	N/A	MNCQNYMMNIKDLKENRLLTKKDFTIFFLPHELHEFKQMNIDKLRFTYGVTHSINGKFKDMRGSCFKCLTPLRADYMAYKNYCMDCQ
Ga0208667_10045408	F087768	N/A	MKKTLKQFSLYTFNVGKFCSTETDSLEQAISNFNKRLNLDHNGYHHPNMDYNFEPIRIITEQKINDKIELDRCNSETILKFNMDKLNHLILKKSA