Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1004540 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3920 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024922 | Metagenome | 204 | Y |
F039093 | Metagenome | 164 | N |
F070652 | Metagenome / Metatranscriptome | 123 | N |
F081885 | Metagenome | 114 | N |
F087768 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208667_100454010 | F039093 | GAG | MIKTLLILGLLSGFGLMFLGVIALFSNYAELIMPSYIPLIIIGSGVVIFFRTLHHINNNI |
Ga0208667_10045404 | F081885 | AGG | MKPIDKVNVDKDLMFFKTDKGKKVYEIKTEIQRYLTFQVVADNSDEAFEKYLDNAKVDVVDDSFSTEIVLSGQDEYDQYQDTVCIGTIKVDDDDEAYVSCEIKKDKPLILTKEIEVK |
Ga0208667_10045406 | F070652 | N/A | MTELKQDHFELIDSNKQRAFEERKQMRVELTKYIDKCNTYELSKLYDEYKRLKRK |
Ga0208667_10045407 | F024922 | N/A | MNCQNYMMNIKDLKENRLLTKKDFTIFFLPHELHEFKQMNIDKLRFTYGVTHSINGKFKDMRGSCFKCLTPLRADYMAYKNYCMDCQ |
Ga0208667_10045408 | F087768 | N/A | MKKTLKQFSLYTFNVGKFCSTETDSLEQAISNFNKRLNLDHNGYHHPNMDYNFEPIRIITEQKINDKIELDRCNSETILKFNMDKLNHLILKKSA |
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