Scaffold Ga0208667_1004520

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1004520
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3928
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F044460	Metagenome / Metatranscriptome	154	N
F048912	Metagenome	147	Y
F074734	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100452010	F044460	N/A	MEETDEHEEVLEHLDESISALVTKGYDFFWSNNELCYDSDLKVVRSDRPRVRPRTWFCHMNEDERERLTREAK
Ga0208667_100452011	F074734	GAG	VNAIEAEMKRWGRATYRQFQQIYKESERGSEMDSSKRVLSKLAPQLAQPIEDFFNRFASDDSPSMPIWLCYIADFHPQMVAQIALKTVLDKMYAETRHFSRLASEVGKAFEEIARQRVAEHTVPKNKMFSVQKPKSKRSKMQRFYTVEKNNRRFTCWETRLKVSLGAWLLGEIERHTGLIEFRIERFGKKQRKIVTLSAQFSDWVR
Ga0208667_10045206	F022875	N/A	MKLNLTEETKENIRVRAKQHINSTDPSTDHWDSIETPDGFVDFNIWQDDDYKGGEWIVTCYDTYCSTDDGCVHTDTSTFKRIALQ
Ga0208667_10045207	F009459	AGGA	MSREITLEPSVMIEELMFYIHQEEMGGDCIDPSNRFFPLYLELQKLKDKIDNDKHDLYHSVTADETK
Ga0208667_10045209	F048912	AGG	MRDYDSWLTSFLDYEDDDGLTDEEREELKDLYEAWVIDQYETNKY