Scaffold Ga0208667_1004207

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1004207
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4125
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030293	Metagenome / Metatranscriptome	186	N
F038216	Metagenome / Metatranscriptome	166	Y
F105072	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10042076	F038216	GAG	MTKQINYGMHEQLENSHRTLSDAVTMYAIYYSDWTENLNELSEYYASDEWKDSFDQRSEKHLELVRRRNHTIRQIQEIGTQLRSIGLDVDLCEWASVDDYYIDDAA
Ga0208667_10042077	F105072	AGGAGG	MENITRSKILGRSVILRKRKILSKPFSYNQGECYHNLTGGLWSLYIEHKKGRPVNVSIDD
Ga0208667_10042079	F030293	AGGAG	MIVEMLDDRVSIEALGLLPHFFERSLYIEGQSIQSVADKMDDLYHYGGFVYHLDGTIDEKGVYTSAHDDEDILDPIARVDKLGFTLWVYPYAIVGLTDNKGNQ