NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1003613

Scaffold Ga0208667_1003613


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1003613 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4614
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F015990Metagenome250N
F027830Metagenome / Metatranscriptome193N
F055270Metagenome / Metatranscriptome139Y
F087206Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100361310F002399GAGGMSNETRSKYKSIIGQLRKKYGLKDNTPIHKVEQIMTAEDWQAFSEALTFPNGKPTQRGK
Ga0208667_100361311F055270AGGTGGMTLLYNRDFNYYDHKTKTVDMVKYIKTVMANNFIEEIYSLYLDYPTQFKQASSEIGYLYSKELNCFVYPPKDYAEYHNNNELLKEVQQ
Ga0208667_10036132F015990GGAGMGKGSGRRIEDINKIRNNWDSIFKKRDKKQITQVTIEFEMTGYPSIDDINNHVQELLTNNKLQSKTTTRNV
Ga0208667_10036133F087206AGGMSNHYTEQHNEQELENIQSYVLEQDRKGLLENDIRDICFMYGLHPDDDRDEILEYIAESIFYEQTIGDLV
Ga0208667_10036134F027830AGGAGMTNNMTFNIAFCKYSAHFRDRGFGGELPYISKTYSKATGEGGYLLRDENDIHIAYITKDGKVEA
Ga0208667_10036137F004603AGGAMIFSININGSIIDWCYNLDCQDKQYHKTWIPKSRDIQIITKDLNGLTVSEVKKIILEDIQPDINMVKEHNNKLARARRMGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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