Scaffold Ga0208667_1003196

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1003196
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5069
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010571	Metagenome	302	Y
F010878	Metagenome / Metatranscriptome	298	Y
F020816	Metagenome / Metatranscriptome	222	N
F061778	Metagenome	131	N
F095310	Metagenome / Metatranscriptome	105	N
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100319610	F020816	AGGAGG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWDVYKDTLEITEVKTWEEDDE
Ga0208667_100319612	F010878	AGGAGG	MKIKAWHIGIVWEDDTEEALADIPDWVAKRVDEFLDELEEEDDDNI
Ga0208667_100319616	F010571	AGGAGG	MSNTIQENYIQNLYEYLYDKHYKELSTISDDVEWIENEAERLAEIDLDNFEMEG
Ga0208667_10031964	F095310	GAG	MLHGIWKTIATFQGEVNNMKMFLIKLLTGIAVVLTMYLAILILNEDTIENADDILTLNRKVESLEETLQAVKQQQEYLQIMQKGLRESINNRTIEVDKKVEEAVENKFKEQSATGGLGVLTSEQILSTEEAVVE
Ga0208667_10031967	F106085	AGG	MTNNLLEVIRKKLYFSLDKVRNKFTIFKKLKENNKIIINKDNKNNIPKHLRELNKETLQTLQELYKERM
Ga0208667_10031969	F061778	GGAGG	MNRYRIAVHYEEGFTVEVTAPNSKEASKVAKEFVSANCGVSESFDNVGEDEGKFVKPYHRDYWIVGER