Scaffold Ga0208667_1002811

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1002811
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5473
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F024653	Metagenome	205	Y
F038713	Metagenome	165	Y
F041144	Metagenome	160	Y
F097155	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10028112	F038713	AGGAG	MIFVTFTIDYGGYEYLDYAWFKDYGEAHYENGESITDKDIIRDVYGEGRSDEDFEENFNEETNVYTDYNDDTIAVHKVQEVTQKELDVLVKMGVLYK
Ga0208667_10028114	F041144	AGGAGG	MISDAITTVGFALQSHVNTCYHEDTKENRAEREELEVAWAIIKKHLKENEDD
Ga0208667_10028115	F024653	AGGAG	MSRDIDTIPTVRRHIVSYKIYAEWSDNPKLVEIEHEMDGHLENTFNDWLRDIEDEEDLK
Ga0208667_10028116	F097155	AGGAG	MKPSKYYIDASSFVEVTSELADFMMQEKLGEKYYEDCIYQDEDDVYNFTDEGQEIFNNYIDHMTRILGEVNIVHEDQLQEGE
Ga0208667_10028119	F019393	GAG	MYKEIETYKDINSFIEGNNGLWHMLRAKYKKLDKETVVINNTTWKLMKGNMTCLTK