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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1002738 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5569 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002221 | Metagenome | 581 | Y |
| F006845 | Metagenome / Metatranscriptome | 363 | Y |
| F012117 | Metagenome / Metatranscriptome | 283 | N |
| F013639 | Metagenome / Metatranscriptome | 269 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_100273810 | F012117 | GGAG | MVDILGGMSSSNESQQVYLAFKTSHQQFFANGETEVDFQYLQLDPATFKSGWGRYTKADGFEYAWDDKFGVVNPKPADDYKRAFSAWVMPQGAQHAYLWQRFTYAESSAFNNILGSFWNQMDASSDSLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRAAEFVIPQWYIDQEAPVEDTFKSPNDGLADKVQEMVDRNELSDDDIPF |
| Ga0208667_100273811 | F006845 | GAG | MKSYKKQMDLNSYLLQEDFEEFCRKAYERISIACDVFGIVNDEDYYSFKERCYTQLETDYLNSIDKTIH |
| Ga0208667_10027382 | F013639 | GAG | MKIDKQKLKEKIKQGKSSHDIAMTYDVHPSTIRRKAKELGLKFETQSCWRKK |
| Ga0208667_10027387 | F002221 | AGGA | MKIYLDETLKDKLKELRTYENETYVKWGNRKRIFKMVGVKFEIKFCRAEQLFKDSMINADKQKQLKMTEMMLRAFEQLNIKCEESGYIQIQPSARCFTFDKKTALVCDTDADKPVLEKIHKDEKEIMIFSVEELLRCLPNDFIRAKEILSRLDKSVNFQRVDYV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |