Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1002514 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1002514 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5942
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5942

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F016292	Metagenome	248	Y
F021402	Metagenome	219	N
F023243	Metagenome	211	N
F077486	Metagenome / Metatranscriptome	117	N
F092717	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10025141	F092717	AGGA	MADFKNKISLWKRKPKETDVAGKAYPHYSGNINVDGVVKDIAVWIQTEKTKPGSPDMSGTVSEPYKKPENNTEE
Ga0208667_100251410	F001839	GGA	MKTFEKFYSELLNNQVLTANEKVIYVICKSFATAPRGCRISHQYLMARTGIKTRKSLIKALDRLTLFGMLARKQIDNSTCHYVFDKETMQQYIQHNQNKRRKISLSKKKSNPQINQQNTNVIHMVKKES
Ga0208667_100251412	F021402	GGAGG	MITTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMFKVIDNSIGIGEDKESIKNSDKHLARLRITLTSRQLSIYDFILILMLDVAAKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNRSLINVCRIANKNLKKYLTS
Ga0208667_100251413	F077486	N/A	MLNDLDSLLTESERNIMLKNSKTLTNPISMFKIDIVKVFKKKETLKDIFKCKKLQKKHKIQDFKSI
Ga0208667_10025144	F016292	AGAAG	MEKRIRKIGDCYTKFNLKHTSKSQNTIPDDIRFRNYIVMTTKEKMNMPKNCSFEGGTLEHELVQIHYTQNKTLEEALKDETVQDRINNYSSVDEKDKIKFDHIVERLIPVAQNHVDNIGELPKQKWKAELEYTHWDDRIKTYFLSYVDLVGNTHFGDIKNVFGTLIKTKSGFSYTKKKCPVVPFHSDCLQIALYQKLLPKHKPFLTYASDSDRRIFTPENCIELRPESLEHYYDELVLYQQCWEKKLELADGNIETLALLCKPDFSEIRKNGFWWKGTDPDVVKRFRGYYGF
Ga0208667_10025147	F023243	AGGA	MNPEIELDLYEMTTAAQTGLLRVTESIKLNQNWGHDYKGTLEDKISKSISGAMAEQSLCKYLDIPYEFHTNVGSVPDVRYKEYNIQVRSQTPKKNNNNSLIIRPKGVKPNEIYVFILSEAPKFIIKGFINSSAVIGKENYLTDFNLARPKVWSVPLEILNPIMLLKDESLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1002514

Overview

Ecosystem & Geography

Associated Families

Sequences