Scaffold Ga0208667_1002237

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1002237
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6424
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F015990	Metagenome	250	N
F083372	Metagenome	113	N
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100223710	F015990	GGAG	MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEMRNYVEKLHKEDKLVFLTKTTNV
Ga0208667_10022376	F002399	N/A	MCIMHIPKNKSHKSIIGKLRKKYGLKDNTPIHKVEQIMTPEDWQAFSMALTFPNGKPTNRGNQ
Ga0208667_10022377	F083372	GAGG	MIMQQYKISYPRAEFCYAKHLRDNLKHEGEIIYPHEPSSRLLEDGSWLLITITGERLGTVSPNGTVRLT
Ga0208667_10022379	F087206	AGGA	MSNHYTEQHNEQELENIQSYVLEQDRKGLLEKQITDMVITYGLHPDDDRDAILEYIAESIFYEQTIGDLV