NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001407

Scaffold Ga0208667_1001407


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001407 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8854
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032087Metagenome / Metatranscriptome181Y
F058510Metagenome / Metatranscriptome135N
F076587Metagenome / Metatranscriptome118N
F083373Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100140710F032087GGAMLPMPPETGRQVIMKFLRYEITRATTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDSSILW
Ga0208667_10014072F058510N/AMLSQETELSFKVARYADSFPVEVCVTFAAADSNKRPFIEGAIIHPSQEVYDRLNNPATSMRCYCHSDMPLQQQQEMIASIEPGTTIRVLAQQPSTKYDNKAFGTLISSFNTFKPENKKVQLFASAPGVKQTFTVSNMPSDLVERMDAKLDDIDVKRTYFLKKLINKFLAGDFDEDFV
Ga0208667_10014075F076587AGGMAHAQLISFSYTKGSDALHVEAIVDDAVQVLPATHLDPPEFDSAHCQAVILWDEPLDHTNAPTQEQVQRMLPWITDWCVIPPIEFDD
Ga0208667_10014078F083373N/AMSTHPFDSSSFASVKLKNVPSYSQGEAADYNLRVAAWFDNYAVNASQVDAAMADQDRQWKMRTAEGWEGDEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPDGQHESEWTGPLPEYTLL

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