Scaffold Ga0208667_1001407

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1001407
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8854
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032087	Metagenome / Metatranscriptome	181	Y
F058510	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100140710	F032087	GGA	MLPMPPETGRQVIMKFLRYEITRATTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDSSILW
Ga0208667_10014072	F058510	N/A	MLSQETELSFKVARYADSFPVEVCVTFAAADSNKRPFIEGAIIHPSQEVYDRLNNPATSMRCYCHSDMPLQQQQEMIASIEPGTTIRVLAQQPSTKYDNKAFGTLISSFNTFKPENKKVQLFASAPGVKQTFTVSNMPSDLVERMDAKLDDIDVKRTYFLKKLINKFLAGDFDEDFV
Ga0208667_10014075	F076587	AGG	MAHAQLISFSYTKGSDALHVEAIVDDAVQVLPATHLDPPEFDSAHCQAVILWDEPLDHTNAPTQEQVQRMLPWITDWCVIPPIEFDD
Ga0208667_10014078	F083373	N/A	MSTHPFDSSSFASVKLKNVPSYSQGEAADYNLRVAAWFDNYAVNASQVDAAMADQDRQWKMRTAEGWEGDEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPDGQHESEWTGPLPEYTLL