Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1001389 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1001389 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8935
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8935

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (72.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100138912	F038657	AGGAG	MDILGGMTNSEEKPQIYFGFKTIGQQFFANGETPIEFKYLQLDIDTFKSGWGRYTKGDGFEYKWDAKFGVVNPKPADDWKRAFSCWVMPDGGHAMLWQRFTFAESSAFNKILGTFWHEKDANAGKLPVMEYKGSKPIQVGMGSSSELTFEFVKWGDRGFQVPDWYVDPDAPVDNDDGFVSPNEGLADKVAEMVAKTELSDDDIPF
Ga0208667_100138913	F006845	AGG	MDLHSYLLEEDFEQYCRMSYDKILVACEFLGIINDEDYESFKERCYSQLETDYINSIDKTIH
Ga0208667_100138915	F093807	GAG	MTQYSDIVETQRLKLNKQKDEWYIHVNNGAGYTEVKNGDTLTITYHATGKKEIFIDAN
Ga0208667_100138916	F013088	GGAG	MDEVIKKALWIPEELHKDIKIFAIQNNLTIEQASQMLIKLGMVTYEAEKNNDSV
Ga0208667_100138918	F063662	AGGAG	MEVVFNILGGGEIRLPKREVRGYYKDFITGETKVQVGNDEHKVRESLTEIAYLMGVVK
Ga0208667_10013899	F002221	GGAG	MKTYLDESFESELKKLRIYESESFERWGSRKRIFKMLGVDFEIKFCRAESIFKDALYKGHVKEKIKMVEMMTRAFDSLNKKCEESGYMRIQPNTRCFNFDKKTALVCDTDDEKPILQKIHKDEPDMMIFSVEELLRCIPEDFMKAKELLSKLDKAVNFQRINYEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1001389

Overview

Ecosystem & Geography

Associated Families

Sequences