Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1001323 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9199 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (76.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003531 | Metagenome | 481 | Y |
F005208 | Metagenome | 408 | Y |
F005656 | Metagenome | 394 | Y |
F007474 | Metagenome / Metatranscriptome | 350 | N |
F008924 | Metagenome | 326 | N |
F016005 | Metagenome / Metatranscriptome | 250 | Y |
F027684 | Metagenome | 194 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208667_100132314 | F016005 | AGGA | MQDNLPDNRVDLFYLANRLVEILETDNNHIRAELEEFKQEIFHNIGANAVFEQNN |
Ga0208667_100132316 | F007474 | GGAG | MSAFKDWVMDEQENRQDSFLDNCYEKAFVIYSYDKNLHISHLENSDMPLKDFLKAYKVKMRELGDDEVVYHI |
Ga0208667_100132317 | F027684 | AGGTGG | MKKDKLCDTCKKEKAVIIEHDIFYSCVKCMWKHVMQQQKKLAKPFEQARKWIEAQ |
Ga0208667_10013234 | F005656 | AGGA | MILKDLLNLQQIVEKRAIPSDVLEFDSTHYSQSKDIAIDILDLHLTHAIRILNNYLNDDEYSRTYSDRQEINDSLRGIRDRVEDISEVVNK |
Ga0208667_10013235 | F003531 | GGAG | MKRKVWTQNEIELARQLLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYKPDPFSKYTRKKERNIFVDN |
Ga0208667_10013238 | F008924 | AGG | MSLNRVEELDLYKEYRHAYDKATELEFFDKQQEADYYYEYAQQLKKKIDNGETILYKVNF |
Ga0208667_10013239 | F005208 | AGG | MTLEELYWWRVERLWTMYNSITDDLVYKSMWERKLKELLLRGFRGE |
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