Scaffold Ga0208667_1001323

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1001323
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9199
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005208	Metagenome	408	Y
F005656	Metagenome	394	Y
F007474	Metagenome / Metatranscriptome	350	N
F008924	Metagenome	326	N
F016005	Metagenome / Metatranscriptome	250	Y
F027684	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100132314	F016005	AGGA	MQDNLPDNRVDLFYLANRLVEILETDNNHIRAELEEFKQEIFHNIGANAVFEQNN
Ga0208667_100132316	F007474	GGAG	MSAFKDWVMDEQENRQDSFLDNCYEKAFVIYSYDKNLHISHLENSDMPLKDFLKAYKVKMRELGDDEVVYHI
Ga0208667_100132317	F027684	AGGTGG	MKKDKLCDTCKKEKAVIIEHDIFYSCVKCMWKHVMQQQKKLAKPFEQARKWIEAQ
Ga0208667_10013234	F005656	AGGA	MILKDLLNLQQIVEKRAIPSDVLEFDSTHYSQSKDIAIDILDLHLTHAIRILNNYLNDDEYSRTYSDRQEINDSLRGIRDRVEDISEVVNK
Ga0208667_10013235	F003531	GGAG	MKRKVWTQNEIELARQLLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYKPDPFSKYTRKKERNIFVDN
Ga0208667_10013238	F008924	AGG	MSLNRVEELDLYKEYRHAYDKATELEFFDKQQEADYYYEYAQQLKKKIDNGETILYKVNF
Ga0208667_10013239	F005208	AGG	MTLEELYWWRVERLWTMYNSITDDLVYKSMWERKLKELLLRGFRGE