NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001323

Scaffold Ga0208667_1001323


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001323 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9199
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003531Metagenome481Y
F005208Metagenome408Y
F005656Metagenome394Y
F007474Metagenome / Metatranscriptome350N
F008924Metagenome326N
F016005Metagenome / Metatranscriptome250Y
F027684Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100132314F016005AGGAMQDNLPDNRVDLFYLANRLVEILETDNNHIRAELEEFKQEIFHNIGANAVFEQNN
Ga0208667_100132316F007474GGAGMSAFKDWVMDEQENRQDSFLDNCYEKAFVIYSYDKNLHISHLENSDMPLKDFLKAYKVKMRELGDDEVVYHI
Ga0208667_100132317F027684AGGTGGMKKDKLCDTCKKEKAVIIEHDIFYSCVKCMWKHVMQQQKKLAKPFEQARKWIEAQ
Ga0208667_10013234F005656AGGAMILKDLLNLQQIVEKRAIPSDVLEFDSTHYSQSKDIAIDILDLHLTHAIRILNNYLNDDEYSRTYSDRQEINDSLRGIRDRVEDISEVVNK
Ga0208667_10013235F003531GGAGMKRKVWTQNEIELARQLLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYKPDPFSKYTRKKERNIFVDN
Ga0208667_10013238F008924AGGMSLNRVEELDLYKEYRHAYDKATELEFFDKQQEADYYYEYAQQLKKKIDNGETILYKVNF
Ga0208667_10013239F005208AGGMTLEELYWWRVERLWTMYNSITDDLVYKSMWERKLKELLLRGFRGE

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