NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208667_1001163

Scaffold Ga0208667_1001163


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001163 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9996
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027155Metagenome195Y
F050769Metagenome145N
F103167Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100116313F050769N/AMAGQHNTKNAALQQALMAQQPPVMPFVPPGQFIDIDERYYRGVVADPLSYDGFPRAGKALQQYPISYTSAKLMEQPNTFGMVQNYGSYIFNPQPFVPGGGTDMHTVTYPFV
Ga0208667_10011636F027155N/AMAETSFNYVREGDGIVTFVSTEGKYRVVMRAWVDDEDWDCFHKNIGEATPKMNEYVEMIK
Ga0208667_10011639F103167AGGCGGMEITQARIVDVPIDELHSDHVNKGEFVEMEPDYLTNMFKDLVTEEGYELGAEFDLGETHGADYYAERNPGFPDEWYEILAEEHKVLNKEYKDNSILSITNDVSDGHAEPADDCEPKVEIGPPTAPSENIEEVEPKVEQLVPDPPTIP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.