Scaffold Ga0208667_1000806

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000806
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12571
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F020921	Metagenome / Metatranscriptome	221	Y
F050424	Metagenome	145	N
F072428	Metagenome / Metatranscriptome	121	Y
F090413	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100080613	F050424	GAGG	MGIEFENIYKDRVIDTIQKLLKQNLASIPVVFDEHRGQESFLIIPEADAFIDYASNVHIREFTTVINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITNWYGGIVSSVEYTRDEEDETISNVIITFQCNTNEVIS
Ga0208667_100080614	F090413	GAGG	MKYKHIKGLQLQKPSYLSTSNQKIRELLAGGEVELEKENLEEFESLGVQVQPVKKQKPKKKEEK
Ga0208667_10008062	F003637	GAGG	MAKVIAEKVQEAIVADAPKMVEIKHTRSMQDASGKDVEVVDWTETKSVDQAIADCETHKANLEAQLTECEAELADYIAIRDAE
Ga0208667_10008063	F020921	GAG	MATPAVPTTNVGIYNHLREATDCNENTNLSLASLCNGGSFAFDNSFGAAGGPAQSFDVIGGTNNPITTTPDSVNLYDDIIGTAPFNLANTIGGKYT
Ga0208667_10008068	F072428	GGA	MDLGETIKRLKELSAILQAKTISDREKEYYLPEMFRLIDKLEVPQLIGEFSNDYIS