Scaffold Ga0208667_1000405

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000405
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18853
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005945	Metagenome	385	Y
F008946	Metagenome / Metatranscriptome	325	Y
F027182	Metagenome / Metatranscriptome	195	N
F052535	Metagenome	142	N
F085541	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100040511	F085541	N/A	MSVWYQMGQSVRNLLISLTSTSKAILDTENNIQSRTNDELGTIAFATDTNKLYVFTDSGWQHAQ
Ga0208667_100040512	F027182	N/A	MANILQQIGTTVKSKLDEKVDKSDAVSDFLKSVLGFPQDTVSPSVDTAANITARSNDDVGTIMYGSDSTKLYVFDGSDWQIFNNS
Ga0208667_100040519	F005945	N/A	MNINDQTDTFQYELAKLIYRFKSEYDINDYTIAGCLDFAKLSVLTETDDVIFTGELTEDPEEDDEEDIQPHF
Ga0208667_100040520	F052535	N/A	MKRPYEVLALDDSNTPVRIATIIENSPAKAKATGQKLAKSLR
Ga0208667_10004059	F008946	GGA	MRRSPTRRPVVRPNPLSFQQRTVAAVSSAVASENKEKADNLQTKVTSLESDPFFVTIDGGGAVLEDTDIFDGGQPDA