Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000403 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000403 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18876
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (29.03%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18876

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (29.03%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009110	Metagenome	323	N
F014018	Metagenome / Metatranscriptome	266	Y
F016148	Metagenome / Metatranscriptome	249	N
F022198	Metagenome	215	N
F028037	Metagenome	193	N
F037475	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100040310	F022198	AGGA	MKTIQQYRKDNPHLSEEQMQSAYHVTEIDAPEFAVSGFTLIAPGRCLAIHESGNIAPLRLKGSYGDASAR
Ga0208667_100040311	F009110	GGA	MISSAVRYMESIKDKVPPAYEEEITVKPGTPHLKTLGLDPHKMVKAVDKLKAKGLEVKDACEQVGMTRSQYYKTRKGITNRR
Ga0208667_100040316	F037475	N/A	MKAIETKYLAATDTRGTRIKATVGKLTATVPYDYALSDAAVAFEAVKELVRKHKLEWDISKMVYGGTDKGYTFCFPESTIEA
Ga0208667_10004033	F028037	AGGA	MPCYKITYTRLDMPSPCSAIKTAHTEEEAIKCLTTGSKTKGYKLKKTNVSITITQITELK
Ga0208667_10004035	F016148	N/A	MIIRTATYPYGPANRMDGDTIVQRLQVVAGRPRFVDDYVGSLCDGDEYWIPGFHMKPKGRTGNQILSWMTENFIDAEFEYDTDMMPEAVVLYNKHGQTLVTYPYGDDCLSEACEFVMDQEEREDI
Ga0208667_10004036	F014018	N/A	MNKKDTHRTPRHERTQLEQDFRDKAANNFYTSRKCDNTASQALYYGQYIANKWAAVSVRTSHRYGFLQEMTKEHDQFLPELKEESYAKKLMRGYDALEEMKKVSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000403

Overview

Ecosystem & Geography

Associated Families

Sequences