Scaffold Ga0208667_1000400

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000400
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18982
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (89.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007687	Metagenome / Metatranscriptome	346	Y
F048584	Metagenome	148	N
F051862	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100040010	F051862	GGA	MDGKAIMGALFAALLALLGWNISTTHELTLQVQKLEIILLNDAFAN
Ga0208667_100040029	F007687	GGAG	MAKKTAKAKAAMANRGTFDSKHTDYGEPIHYKVAAAVEPFTFASAAASKVWGDTLVNCVPPAYALRYRELRGDLEAAMVANDHELCVDLATSLIKALKMMNLKARQDGHEPPKVDGHICEWGGKIYCFLASGDISAVRRANPNWVVYPISDVCAVLNALTDDLVAPVVNEFPKAKITEVRMYDDEINFEPNGE
Ga0208667_100040035	F048584	GAGG	MNDYDLTQYCNEIAEEISRDARDLEQATDWAHESADGSEYVIYYAKAHAVCQNCNIDQGEDFFSECYGGEHGMSYDDIACSMAYGEINARICSRLWQIFKSREGVAA