Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000374 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000374 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19981
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (38.10%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19981

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (38.10%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011846	Metagenome / Metatranscriptome	286	Y
F019754	Metagenome	228	Y
F020000	Metagenome / Metatranscriptome	226	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100037411	F011846	N/A	VKLSAGFIQSLEQENEGSSSKDNYLGYTKLEQGKPANFALLEQDPLEYWLVWAEAKASGSMKPFRFMGQPSSDEIDLELGSEYVQSMNYDKTAIRKPQQCLTWPVYNWDMDRVQVLEVSHISLARQFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLNRMVTGDDPFTES
Ga0208667_100037416	F098218	GGAGG	MSGDINWNNRPHEVIAAAKSRALAALHHKHSKGLTTLERAYLHALKTGRVDPDD
Ga0208667_100037418	F022313	N/A	MTYHFLPREEYESAKLERILAELEAIIEREKKRHMMDEHLSHSMRDLLEDEIIPMLEAELNYDPTPDTAYDFFHQ
Ga0208667_100037421	F020110	N/A	MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIELSDDGPSLEESSEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA
Ga0208667_100037423	F019754	AGGA	MNNSDDFMLPSELEPSWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAERNPNLK
Ga0208667_100037433	F020000	AGG	MADVGTTQVDRFTNTVEFTGNAMSSVDDWIQVHAHSSEFSFAANVTSSANFTIALEANFNGNGDWFTIDTSKTINAAGQYVYFYTGKAATLIRMRIASISSGVVAMTPHVVVAYHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000374

Overview

Ecosystem & Geography

Associated Families

Sequences