Scaffold Ga0208667_1000343

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000343
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20813
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020172	Metagenome / Metatranscriptome	225	N
F022785	Metagenome / Metatranscriptome	213	N
F027807	Metagenome / Metatranscriptome	193	Y
F066736	Metagenome / Metatranscriptome	126	Y
F087132	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100034311	F087132	GAGG	VATTRRHKVRAVKDEENRRALSVRGKAEYIFDLIDEIGELDPQTDEHFQAKVQQKKTQAELRLKMLAKTLPDLKQVDADLSSSDGSMTPPTVIELVAKGLD
Ga0208667_100034319	F020172	GGAGG	MCTKVKRAMFCTRNGYKHIENLERVCVLVGRLKGLTESEYLDLCAASKLENARALELAKHFPAR
Ga0208667_100034330	F027807	AGGAG	MTKQFIEPQPIKSDLLDELDSLVGQLKNLSAYKPKPFQVIEASMDARLADFLELSEQDYIKGWTDQEEGIRHRDGMPEAYNAGYADSYDYENQGGI
Ga0208667_100034334	F022785	AGG	MTIERSVAKLEAQQEAMAQDVSEMKSALTSIAQTLQDLSSMEQRQVHLTETVTRAHKRIDEIQAVLKDEVKNHEKRLQSIEISIAKNQWIERIIMAGVMAVIGMWIKGGI
Ga0208667_100034335	F066736	AGG	MKVKEKFHNNHDGTFVVEKQFDNTPYLERTAKLRSMGAGKLPESWCVGSIPMHLLAQWMKEERISWDDLEGRKKLIMRKLNDPDFKKLRIVEGTV