Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000327 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000327 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21320
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (22.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21320

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (22.22%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005194	Metagenome / Metatranscriptome	409	N
F009788	Metagenome / Metatranscriptome	313	Y
F087884	Metagenome	110	Y
F099114	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100032714	F099114	N/A	MRGFFYTLNLYGHLSIYICMALTIQDQPTTNIPEPSFAPIEYLVSSTNTTQSGFKVIASLFTDPSGSNTKIATLQLNTIPSATQVVTDIQNIIQSFVTSDYSILTGDTVDVSQSDLTDFKIAFQEYYSGALQGSAVSGNTFTSWNASPKYIEWVDLSGGTKKYFDYSIEDASSETDKEFLNGFSQEAEWFNLSKANNFLKIRSIQKYQASWIMRGGNTDTYKIYLLTMDDTFSTILQTTMTAANTAGLYKLDVGPSEVASHSWGSTPVMTNVKYYALRILNFTEDVWATKTIMFEIDDCENTYTDFELHYLNRKGGYDSFTFSGKSQQNTDIKKNFAKYNTRTIGASSITHKTYAQRKRAFHTSTMDKFKLSSRLLKDFEVEGLEDLVSSPEVYWKNDGNFVSVNVTNNSYRHSKSENGEVYSMELEIEIDNSDKRQW
Ga0208667_100032718	F087884	N/A	MDNTQSYNITVGQYQALNDIDEGLSLIEQNIYAVAALKDITYEEAAKIKMSEFKKIVEIIQEFNVTLLEKIRIKNKVFLNGTEYHLEHKPDKLTSGQLLDVINIRSKHQGEAVKVMDLLLAAMSRPKGKEYGDDKLTLTERAALFKGVKLDEVWNVFVFFWNLWNDYFLDSEASLRKWMGETVEMTREILDNDGDSSV
Ga0208667_10003274	F005194	AGGA	MEGIKAEHPQINTILKGNIYDVDLTKDVTGSYLIYEVVNISPNGFNGIDYSLDIFLCDNVTEINTESNEVSVQNECCLIALDIMSIFENYNKATYADKDLALVLNKTWSIQPFTERFDSLYSGAAISMSLSSAYGYARCKIPI
Ga0208667_10003278	F009788	N/A	MDIITKDATNYIYCNISNEVENTYYTMSIEAPEYEVNVTLEAPDGVNDRYVAFELIEGTQDLPNATIELPNNGDYPYKIINATSLGGTEGIEIHRGILRLKQPKEIVYSYTDEQNTYIYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000327

Overview

Ecosystem & Geography

Associated Families

Sequences