Scaffold Ga0208667_1000300

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000300
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22317
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (97.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F013099	Metagenome	274	Y
F016668	Metagenome / Metatranscriptome	245	Y
F050298	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100030021	F016668	GGAGG	MIPIGQLRLLLTKAGLDYVITRVEGNIAHVNILIDEVK
Ga0208667_100030024	F000375	GGAGG	MTRLYDLEPMIMDCWHVCDDLQVLFRQIGDGERDPTQDELMNALLGMQQVYQWKFEQLFNKYEDALRDRQNKTND
Ga0208667_100030027	F013099	GGA	MNTIWLLVWFVFVPEVGIKYYHLGTYKNETFCGTALRDAAVMVNDKNETVECIGVQVDD
Ga0208667_100030035	F050298	AGGA	MTKSITKITDLGYGWTGMLYSDGTMRVQGDLQESDCIDLPKASVDRLARIFREIQGDTPYTSNGKEEKSDA