Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000298 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000298 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22468
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22468

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010877	Metagenome / Metatranscriptome	298	Y
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N
F050369	Metagenome / Metatranscriptome	145	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100029811	F010877	N/A	MSAKELLIALLSGTMPKGDTKSEMFKFYNSMVGKSKYFPKQENPKTSCGSCIQRVKTSIWKWYHSDETAPSFSELTFTGRLGAHNIPLYKITDAK
Ga0208667_100029817	F026712	N/A	MKQTFYPTDSEQQFLMDIVINEFAHRHLPMDNYNVQEVAYRQAISDGAMRTDNYFKL
Ga0208667_100029821	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGVSNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE
Ga0208667_100029822	F077286	GAG	MSKLTYTVEWEGDVTNYKQDFESLEEARMAMIMHHKRNAVIKVGILKED
Ga0208667_100029824	F035552	GGA	MSIKDDLLISADLSNLYWVLGELAEKAKEDDDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKLLSQVMNEKMDEDVNNQF
Ga0208667_100029825	F050369	N/A	MKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNSYTNSLSANEKNLEVRNESEITYGDGDDEYSKYQANAIADTKEIDNLIDVVRDYAETNLPYLQRRALMECVIGESSMKELATDTDTSVRKVHLAKQKAIRRIKKFIGVLNENEEKYGKEEVNGEYVSPSRSKLQIAIQLEPVRKDETRERNYSKAMSFVNTPPEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000298

Overview

Ecosystem & Geography

Associated Families

Sequences