Scaffold Ga0208667_1000296

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000296
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22601
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (93.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005350	Metagenome / Metatranscriptome	403	Y
F014905	Metagenome	259	Y
F025716	Metagenome / Metatranscriptome	200	Y
F048584	Metagenome	148	N
F049548	Metagenome	146	Y
F060810	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100029618	F025716	GAGG	MMQDKEMERMINAAGLIGAIFGFVSGAGLMALVGIIF
Ga0208667_100029620	F005350	AGGAGG	MEDWIKCPECDGEGEVEHDVWVRQSSTWHGDFGSHMEECDVCNGIGQIDPLEQDE
Ga0208667_100029627	F049548	AGGAGG	MSKVEKQIAECTHDFLIALPESMKNGHLGAVICTIFEAFDLDHDNRAHICEGVLNVMLEAELRGDERAAQAAEDVIARAAAKARK
Ga0208667_100029628	F060810	GGAGG	MSIKVGLPGVTFNALCKITEIDREFVGSPDYMGVAQFWDWQHPQKTLLSRASVSARRKIHAALIKDGLDLNGDTGIHRSIISTVLDEEGQGL
Ga0208667_100029635	F048584	GGAG	MQDYDLTQYCNDIAEDIARDASDIEQATDWAHESADGSEYVIYYAKAHAVCQNCNIDQGEEFFSECYSGEHGKSYDEIACIMAYGEINARICARLWEIFEEREEEAA
Ga0208667_100029638	F014905	AGG	MKPIPFHKLSPKMKNVRMNQWIKTYINKGLTLEDAQYAARWRAGHWKLSARMEKVLEGIEDV