NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000245

Scaffold Ga0208667_1000245


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000245 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25028
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025037Metagenome / Metatranscriptome203N
F033110Metagenome / Metatranscriptome178Y
F043416Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100024512F025037N/AMGSEQGGVMAISDEMREQLEQVVQYGDQIKAMFAEQDDVDYEIGDYDEPITQLLGHMNEVMETIDGGW
Ga0208667_100024519F033110GAGMKTADIKNENGYVVYLYINNDLFGTVDVRNKSIHYAEDVVENWQNGILTEDNQHIKNKKTKLFTS
Ga0208667_100024542F043416AGGAGMKRLAEWLQICKVHWKEIFAMSFILHFVTDLLIIGPLFYVLGAVFGLPVEWHGHE

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