Scaffold Ga0208667_1000245

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000245
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25028
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025037	Metagenome / Metatranscriptome	203	N
F033110	Metagenome / Metatranscriptome	178	Y
F043416	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100024512	F025037	N/A	MGSEQGGVMAISDEMREQLEQVVQYGDQIKAMFAEQDDVDYEIGDYDEPITQLLGHMNEVMETIDGGW
Ga0208667_100024519	F033110	GAG	MKTADIKNENGYVVYLYINNDLFGTVDVRNKSIHYAEDVVENWQNGILTEDNQHIKNKKTKLFTS
Ga0208667_100024542	F043416	AGGAG	MKRLAEWLQICKVHWKEIFAMSFILHFVTDLLIIGPLFYVLGAVFGLPVEWHGHE