Scaffold Ga0208667_1000224

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000224
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26390
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003361	Metagenome / Metatranscriptome	492	Y
F006940	Metagenome / Metatranscriptome	361	Y
F016400	Metagenome / Metatranscriptome	247	N
F020703	Metagenome / Metatranscriptome	222	Y
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F025038	Metagenome / Metatranscriptome	203	N
F048992	Metagenome	147	N
F054022	Metagenome	140	N
F059989	Metagenome / Metatranscriptome	133	N
F103286	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10002241	F020703	N/A	RDRNYRLANTTTPEANFGQGVGELNYVDIKSSYDDEKIINTVQRTRTSGTTQIAVSADSVDRFGSNVLVQSGTLNTQDSDVLSIAEQITVANDIPQTQIEALSFAPRENVNLWAKALGLDLGSFVQASVTTTASTTETYELFIERIKHTVDARNKTWNWQIGLSPAETGAWILGVSKLGIDTNISYT
Ga0208667_100022412	F059989	AGGAGG	MNLEQFSQQQGFKHTGQFSHRNFILKDDKAKEIFLKIAKEAEEKLISDTVAAQYLVSNHKEFKHLSYNTVRRYFKDYRYGLFR
Ga0208667_100022417	F021778	GGAGG	MGMPKFLEDYTTVDELISKMNKEYPECRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKDAAPKKSIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNTANAANWYAQALGELDIPEAKLNIDNMKSVKNKIQDIATNLQVGGA
Ga0208667_100022418	F020913	AGGTGG	MLGIFGRNKPLTVIEDIQLQKEPSEFRKVQYVLELEGFICSLDSEFNTNGNLRKAVNRLRTEYNALIYTEVCNCANKQYAKLKKDGSPFMHKAYIKDWAL
Ga0208667_100022419	F023859	AGGA	MKKVIVKFIGVKKYLVTDNADPKKIKSMFKKDLELLPPVWANNIEAVMYAKDEPEAEEE
Ga0208667_100022423	F025038	AGG	MINKNNRRLFVEDEYDLYDVRKARPFWNNVCAVNRWEIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSNISNVRISASKVRLLRENKHGGLIFTNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLRTINPTEVNVLDTNYCDCLEQHLPIMQRSGGRMAFAQKDYNIRGKNGICCR
Ga0208667_100022424	F048992	GAGG	MEYAADDINYGYMSILMHINSEYTLIDKIENIREIDGTIQHPVFGKTKGGVSFSLFLRGFYTVFEAVLNFGDRFDVYVVNEQGNTVMMDDDLDHLISLLHILYINKKAEEDDLLNRALNPHTYRKAAKKMFYNEDPPF
Ga0208667_100022425	F054022	N/A	MKIPHFKKNLKVQFVEAATDFIDPPTQEILWRYGKILFQVKSEHGAISYFIEENKKKVKISRYLIFPVD
Ga0208667_100022435	F003361	AGG	MKLTLNGALDLSRAINSQSIWNKRSNDFFNKLALELKEDSLARLSLPPSPRSQAGRGNKNTGNTRRSVFTAKIGNTNRLRMSEGFKLASSSPTAPFIHGKPIFRGFSPVKKTKPFFPPYKEGSSLAKWAKRGTPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKAGAEDMLESIARDIARSVK
Ga0208667_100022437	F103286	GAGG	MKIKILIGSNYPEKNGKEIRVEAGEICDVPDKIAKSLIKNKAAVKFDSKMAKEEEE
Ga0208667_100022440	F006940	GAGG	MKRLKLDDISNAPALPTKEIEISEWNATVIVTGLTKADAVKINQLSEVDSVRDEVLFEKHLLLTGLKDPEFESIEQVEEFYAKATPNIVDKILMGIYRCMAWTKEDQANIADQFPE
Ga0208667_100022443	F016400	AGG	MSVPFDSNVDLTVEIAFDSNPLDSTQTFTDVSPYLRRFSINRGRATNLSDFNPAAVTVVLTNTDNRFSPNQTTHYYDATNNRTKVQPLKRIRIKAAYGGSTYTLFHGFVESFPVNYPAQGSDSETKIQCVDAFKLFNNATLNGFGWQLGISKLGTNTRLTLTQAQELSSVRAKNILDSFGYTNQAISTGQLEVQVQPETDTVLAALRAVELAENGTFFIAANGNATFRDRNYRLANTTTPEANFGQGVGELNYVDIKSSYDDEKIINTVQ