Scaffold Ga0208667_1000214

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000214
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26824
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (71.93%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030885	Metagenome / Metatranscriptome	184	Y
F031657	Metagenome / Metatranscriptome	182	Y
F037425	Metagenome / Metatranscriptome	168	Y
F044731	Metagenome / Metatranscriptome	154	Y
F044732	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100021424	F044731	GAG	MTLEEIYRKYERLTLEICTGESTHDNTLECAGAMMGQAMKLYKLCLAPEEFDALMQIISQASGLDGNADDDFPSGTLH
Ga0208667_100021425	F037425	GGA	MKTSTVKPHLKWDGFREQYQGIIKNLINNIDICNEGFAKTGDEGYMAARKKYIEEVEQLKTFIKEKEIELGYYGDENED
Ga0208667_100021434	F031657	N/A	MKIKKKLHFLYHIQDVGFKMLTESQAEKYKAKHGDVIWNVHKTLDLSPNLMETK
Ga0208667_100021447	F044732	GAG	MTGKKSITLSKGNNMTDHYFVEVIAENGEILRWEALDKKQADWIYNEQVDLNGVENCKTGKTAGINCNPAHRW
Ga0208667_10002148	F030885	GAG	MKNITDTSIHIIGSSTTKGVALPYTVQMILNDTDNHKAFRKMMSDKFYHKDISIRISKYINEASIHFRNEEDVAEFLLIAGE