Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000197 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000197 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27895
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (13.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27895

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (13.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100019720	F074154	N/A	MNFFQLQNKLFYSNKSKQPEPLDSEGEQAFVPFLFNRWLTMYSKDTVGFVNETLNKYCGIFDTDKQKTYQMYYNLIPRLKFKRISYIKKVKKDKEKQDETDQLKMIAKNKNMSVRELEIYKNMLD
Ga0208667_100019721	F019756	N/A	MAQRSIDTLATQKHLIDLSPNSEGDVGLSDEYELTMIFDDILLVEYVDDNETGEIQRNGIFVPTNALTKAWRRAKVILAGPNAEYTKPGDIVIFPNNLGVTVANIDVNGSTIKRGIFLNEDRLFGICKIKDDNSKSSS
Ga0208667_100019722	F015734	N/A	MIIQRVALDSLLLKNVCEVRFVRRRPRAGDSPARRMLCTKSYELLNSVNGRVTLNYAPPRGPKKINEAAENVLVVWDILMQDYRTINMNSCDLIQQIPDKDFWEYFNENIYPMSPEQKFNFMNS
Ga0208667_100019723	F050011	N/A	MNVSLEIFSDHIKPYLLQTVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRIYEIPYPFEITKQGSKTILCYKLSKLLNFGDLDLQVKFLDSSKKSKIYNENLYIMPLHEVDL
Ga0208667_100019732	F037986	N/A	MNKELLPTELQDALTEESVGTIETALKEKVELSVEAALAGQDELYAEKLEALINQIDKDHTVKMQQIVEAVDKNNASKLGNVIKKYETELNESASTFKETLVESISNYIEEYIDEAVPMTSIEEATRNNTALTVLNNLRSTLAVDSSLMAESVKTAIVDGKNEMDELKAEIAELKKTNETLNENYNQAKSAAFLENRCAKFSGKKSAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPSNPYLEGLDLMK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000197

Overview

Ecosystem & Geography

Associated Families

Sequences