Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000152 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000152 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31946
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (29.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31946

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (29.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006866	Metagenome / Metatranscriptome	363	N
F010650	Metagenome / Metatranscriptome	301	Y
F010834	Metagenome / Metatranscriptome	298	Y
F019760	Metagenome / Metatranscriptome	228	Y
F031655	Metagenome / Metatranscriptome	182	Y
F063568	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100015212	F010650	N/A	MNKMNQFLRIANARLRKVYPNKMQRNAWAAKMYARWIERKTFNDTSKGIN
Ga0208667_100015221	F063568	AGAAG	MENTKVSKLLLVYLWTQGHKIKEYKEAEGITTLHGRDEYKFDVSGSYGGFRVEYTHNRFSFYDGDKKLKDTDLNELR
Ga0208667_100015223	F031655	N/A	MNFAIDIAPLAGILIGINYWDSTMNDDFENPKYHSLQLCFGIFALVVTWSTEQ
Ga0208667_100015228	F010834	N/A	MNELTLSLTLPKTVSLNTLYAGKHWTFRKKTKDEYKKIVEAELARYDHHFAESMSIHIRYNTRADVDNLVLVSKFTADTLVANGWIADDSPKYYHKLTITFDKSVEKNYCEVEVRLKGATLQE
Ga0208667_100015242	F019760	GAG	MASDEKGYGAIYGSTWWGSGDAFTNQIGWGSAMFYILDPAQFQQRALEDGATMEAFECVSKSLRRFPQADRGRQLMDAYDSRVELAGGDTEARTCTINELNELI
Ga0208667_10001528	F006866	N/A	MEEQGKGATVLINRNNLNNLFELLVQVHLRGQLSRDEQAFVRNFIELPEAPTRENRQARRANTQAIKKLFREEAKKAKAQRDDLPNEDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000152

Overview

Ecosystem & Geography

Associated Families

Sequences