Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000145 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000145 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32841
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (85.07%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

32841

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (85.07%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F017840	Metagenome / Metatranscriptome	238	Y
F021207	Metagenome	220	Y
F023319	Metagenome	210	N
F024676	Metagenome	205	Y
F055714	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100014514	F024676	AGGA	MRKEMYVIAMPYPFNTKLPDILEEDDGTIMYFKNKGEAKSFLQNLYDERQIHMQALIDDNIDIMRVQ
Ga0208667_100014516	F023319	AGGAG	MSRKIKCHRCKDNKAYPEDMENNVSNLLLCDDCYTELRYLMADYLNINLQEINV
Ga0208667_100014520	F008925	AGGAG	MTTKTKPTIDVVTLNLVNALKQMDDKLNEGSWEYINLGDVLRFQDTFNEAIRHYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE
Ga0208667_100014522	F012581	AGGAG	MAKYTLYAKKVYYYRKDINAQDSKSAEKRGADYEADDNAERLFEPSGEEFYITSIEENED
Ga0208667_100014523	F013187	AGGA	MPTKKIKKKPKITWGWIYGDECPELWEHFGFPYPDPDDRMKIKFVKYESKEKTNG
Ga0208667_100014528	F021207	GGAGG	MSKRFKQVKVQHFASLIQELKIDVLTQEEFVNAVEEIYMAIFRHNTDGDFVVPTMPNEEGNWKIHNKGQTIEQAMEIINERK
Ga0208667_100014532	F055714	GGAG	MRKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCENSTDFDEIMENIHAVDGILEIHIHKVGEESDWCNVILHNGDPDCEISDCTADGYIDKWTERTDFGQKPWNDGFK
Ga0208667_100014558	F017840	AGGAG	MQIKTSTLIVGANARTINQSVGKVTSAHPTGQGYGKARKGPQVEGTIESQVKEESREYTNNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000145

Overview

Ecosystem & Geography

Associated Families

Sequences