Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1000112 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36109 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (79.59%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008887 | Metagenome / Metatranscriptome | 326 | Y |
F019114 | Metagenome | 231 | Y |
F059873 | Metagenome | 133 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208667_100011217 | F008887 | AGGAGG | MSKGCCNECGYKADYIIDNNNYADNGYKDLNQVPTDKMLCGVCYEDQDK |
Ga0208667_100011219 | F059873 | AGGGGG | MSLDYLTVTIKATTDDDFPDNVKQITHADIRFYVPCNKTKEKKFEKAKDNLLKAVRDVYSLEDQHRVDVTIQYEYFGVNE |
Ga0208667_100011222 | F019114 | AGGA | MKQLEARMIEARDEFHRNRRKRGFMSFWWSDPLHYVLVLEVAIANASSKSINFEAIVKLLPGSMGSRSTIATVLDDFVAREYMCKEKGKDKRKRVYRICKEPMLLVNQYYTNRDFSLKAV |
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