Scaffold Ga0208667_1000102

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000102
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37021
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (80.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021866	Metagenome	217	Y
F050677	Metagenome	145	N
F057326	Metagenome	136	N
F071653	Metagenome	122	Y
F106087	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100010215	F050677	AGGA	MNGILNIPYLIDEAHGWIIVTRADIRKARLHPADFPKAYRTKGEELFALEEDCEMPKLLDKLNSNGVLYQINEKFITYDDKDNPRNWR
Ga0208667_100010222	F106087	GGAGG	MKIKIPTPTFLEIQSELADWLMSSKLGDDVYSTMVEMNNNSEIYTDEGQDIFNNYYDYVEAFLLNFFEKEEDNG
Ga0208667_100010225	F071653	GAGG	MSKNQTDVDVEEHVKHIPTDTILIEVRGGMLIDVHNDPNGYMLFDWDSIEEQDSVEFHKKVLEKLLER
Ga0208667_100010228	F021866	GAGG	MEHNHLKETQLEHEPILKEDITWDQAVRKVESVINDVCKEFEKDGHPYYSESLLKYWRRVLKG
Ga0208667_100010230	F057326	GAG	MRRFNNFAERKARQEITKICKDLQKANKKKEDDTWFEDDPKAVKEKDYGRVYHEPTIQPFTGGYSMLTDIMEKGGNNHLRYTAKHGSARDGVRYTYKKGKK