Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000088 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000088 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39836
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (76.12%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

39836

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (76.12%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F013531	Metagenome / Metatranscriptome	270	Y
F019114	Metagenome	231	Y
F048285	Metagenome	148	N
F050758	Metagenome	145	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100008819	F002399	GAGG	MSIPKTKSSKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKAFSTALTFPNGKPTQRGK
Ga0208667_100008820	F004603	AGGA	MIFSININGLIIDWCYTINNQEKQYHQTWIPKIADIQILTKDLNGLTVSEVRKTILEDIQPDIQMVRDNTNKKAKARRQKNV
Ga0208667_100008822	F048285	N/A	MKIDPHQLEQATAFILETNKYIYEQARKLATQHLEAEDNKNFKSRIKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKIKKGY
Ga0208667_100008826	F019114	AGGAG	MKQLEARMVEARDEFYRNKRRKGFMAFWWLDPLHYLLVLEVAIADASSKSINFEAIVKLLPNSMGSRSTVATVLDDFVARGYMCKKVGKDKRERVYTICPDSMVLMNDWFTKRDFSLKAV
Ga0208667_100008831	F097272	GGAGG	MDLTEFGLDKIEAGESSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLVKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEVKDDFGNGWKPYGSTATEDNADPKDVLPKEDKEEMFPSDVEDEDDLPF
Ga0208667_100008832	F050758	N/A	MATQQEKLIFFMRKAKILVEDCMDKNGDDDLILPLGANRVLADIVDALEEEISRADDYEEYDPG
Ga0208667_100008834	F013531	GGAGG	MVNEKKKEQPLLSFQDKDGNPREIYERDLTDATAPLVEEISRDLGAEKQLMEAYQLATKTVHHMEAVRKNVANTLEKLEAELPPYKKPVKIEGVTKEIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000088

Overview

Ecosystem & Geography

Associated Families

Sequences